PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008343P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 451aa    MW: 51584.5 Da    PI: 6.8752
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008343P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.54.2e-24120216185
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt+++v++Li+a++++++++ ++            +kk++W+ +sk+++erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d
  MELO3C008343P1 120 KWTDKMVKLLITAVSYIGDDIASDIdgsgrrkcqiiQKKGKWKLISKVIAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGtSCQVVENPALLD 214
                     7**************777777754222344555899*********************************************95699998888877 PP

        trihelix  84 ql 85 
                      +
  MELO3C008343P1 215 VI 216
                     65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-21118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEGNLSQGGL IPGGSSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF  60
SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEDPSFNEDS IDGHNENSKG KKGSMWHRVK  120
WTDKMVKLLI TAVSYIGDDI ASDIDGSGRR KCQIIQKKGK WKLISKVIAE RGYQVSPQQC  180
EDKFNDLNKR YKRLNDIIGR GTSCQVVENP ALLDVIDYLT EKDKDDVRKI LNSKQLFYEE  240
MCSYHNSNRL HLPHDPALQR SLQLAFRARD DHDNDEPRRH QNDDFDEHEP GETDEHDDYE  300
ENFVPHTDNR RSLGVLGGSV KRLKRGQDHD DAHACGNSLS PLDCNKSSHP HSQAQFAQAD  360
TAHLETESMK ASTSQKQWME LRLLQLEDQK LQIQVEMLEL EKQKFKWERF NKKKKDRELE  420
KMRMVNEKMK LENERLALDL KQKQIGSGFH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441519.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103485620
TrEMBLA0A0A0KBC20.0A0A0A0KBC2_CUCSA; Uncharacterized protein
STRINGGLYMA10G36980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-140sequence-specific DNA binding transcription factors